Programming with Python and Biopython

Data Types and Type Conversion

Overview

Teaching: 5 min
Exercises: 5 min
Questions
  • What kinds of data do programs store?

  • How can I convert one type to another?

Objectives
  • Explain key differences between integers and floating point numbers.

  • Explain key differences between numbers and character strings.

  • Use built-in functions to convert between integers, floating point numbers, and strings.

Every value has a type.

Use the built-in function type to find the type of a value.

print(type(52))
<class 'int'>
fitness = 'average'
print(type(fitness))
<class 'str'>

Types control what operations can be done on values.

print(5 - 3)
2
print('hello' - 'h')
---------------------------------------------------------------------------
TypeError                                 Traceback (most recent call last)
<ipython-input-2-67f5626a1e07> in <module>()
----> 1 print('hello' - 'h')

TypeError: unsupported operand type(s) for -: 'str' and 'str'

Strings can be added and multiplied.

full_name = 'Ahmed' + ' ' + 'Walsh'
print(full_name)
Ahmed Walsh
separator = '=' * 10
print(separator)
==========

Strings have a length (but numbers don’t).

print(len(full_name))
11
print(len(52))
---------------------------------------------------------------------------
TypeError                                 Traceback (most recent call last)
<ipython-input-3-f769e8e8097d> in <module>()
----> 1 print(len(52))

TypeError: object of type 'int' has no len()

Must convert numbers to strings or vice versa when operating on them.

print(1 + 'A')
---------------------------------------------------------------------------
TypeError                                 Traceback (most recent call last)
<ipython-input-4-fe4f54a023c6> in <module>()
----> 1 print(1 + '2')

TypeError: unsupported operand type(s) for +: 'int' and 'str'
print(1 + int('2'))
print(str(1) + '2')
3
12

Can mix integers and floats freely in operations.

print('half is', 1 / 2.0)
print('three squared is', 3.0 ** 2)
half is 0.5
three squared is 9.0

Variables only change value when something is assigned to them.

first = 1
second = 5 * first
first = 2
print('first is', first, 'and second is', second)
first is 2 and second is 5

Choose a Type

What type of value (integer, floating point number, or character string) would you use to represent each of the following?

  1. Number of days since the start of the year.
  2. Time elapsed since the start of the year.
  3. Serial number of a piece of lab equipment.
  4. A lab specimen’s age.
  5. Current population of a city.
  6. Average population of a city over time.

Division Types

The // operator calculates the whole-number result of division, while the ‘%’ operator calculates the remainder from division:

print('5 // 3:', 5//3)
print('5 % 3:', 5%3)
5 // 3: 1
5 % 3: 2

If num_subjects is the number of subjects taking part in a study, and num_per_survey is the number that can take part in a single survey, write an expression that calculates the number of surveys needed to reach everyone once.

Strings to Numbers

float will convert a string to a floating point number, and int will convert a floating point number to an integer:

print("string to float:", float("3.4"))
print("float to int:", int(3.4))
string to float:, 3.4
float to int:, 3

Given that, what do you expect this program to do? What does it actually do? Why do you think it does that?

print("fractional string to int:", int("3.4"))

Arithmetic with Different Types

Which of the following will print 2.0? Note: there may be more than one right answer.

first = 1.0
second = "1"
third = "1.1"
  1. first + float(second)
  2. float(second) + float(third)
  3. first + int(third)
  4. first + int(float(third))
  5. int(first) + int(float(third))
  6. 2.0 * second

Solution

Answer: 1 and 4

Complex Numbers

FIXME: introduce complex numbers

Key Points